PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0072s0056.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 682aa    MW: 74623 Da    PI: 9.0588
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0072s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-14521341199
                           HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +  + + +p  f++ hg k  e+ t+ le++ g  W++++  + +sg++  ++GWk+Fv + g+++gD +vF+l+g+s f   v+vf++
  Sphfalx0072s0056.1.p  52 T--STMQFPTAFLSVHGDK-LEP-TVCLETQGGMMWQMEVVTTPGSGTMSTRAGWKKFVADFGVQVGDHLVFTLTGKSHF--QVRVFNS 134
                           3..347899****989755.444.9***************99*********************************99999..8888875 PP

2B356.45.6e-18285374496
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           v+++++v k  +l lp+ f+++ + k  es+++tl d ++ ++W vk  yr +  ++ +++GW++F+ +++L+e D++vF+l++ ++  
  Sphfalx0072s0056.1.p 285 VMSKAYVYKGFWLGLPRMFCRDWMPK--ESREITLVDvSEDQEWPVKWLYRDGAAQTGMSGGWRRFALDHHLEESDVCVFELVNPTKY- 370
                           68899***************999844..7789*****6667************99**************************9875555. PP

                           .EEEE CS
                    B3  92 lvvkv 96 
                            vvkv
  Sphfalx0072s0056.1.p 371 -VVKV 374
                           .5544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-1936135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-2038135IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.08340135IPR003340B3 DNA binding domain
CDDcd100175.22E-1840133No hitNo description
PfamPF023622.6E-1242133IPR003340B3 DNA binding domain
SMARTSM010196.0E-1242135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-21276378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-24279381IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-24280377No hitNo description
PROSITE profilePS5086312.929282378IPR003340B3 DNA binding domain
SMARTSM010192.2E-19282380IPR003340B3 DNA binding domain
PfamPF023623.0E-16284377IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MGYQACSDCI SNCQRKHSKE KSSSHGCAKE AAAANELEKP AFMKKMLEGP MTSTMQFPTA  60
FLSVHGDKLE PTVCLETQGG MMWQMEVVTT PGSGTMSTRA GWKKFVADFG VQVGDHLVFT  120
LTGKSHFQVR VFNSSGGERG CRLRSINSPK YQTTPAECTP ARDESPGHGQ MPSVAGRHLS  180
LKRKKRSNAE TPIPSSKKKV IELDSSASIS TSIDGSGNET TSAVAQPGNT PEVLGTPKRG  240
KSLTPHRVIN GVVVSQRRAA TKEEKVKALS AAESLTLSNP HCLMVMSKAY VYKGFWLGLP  300
RMFCRDWMPK ESREITLVDV SEDQEWPVKW LYRDGAAQTG MSGGWRRFAL DHHLEESDVC  360
VFELVNPTKY VVKVHIFTAV NTDTDEGAEN SLQGDASHQK ANNHQNVQDK SNEDEDISAF  420
RRTSSNFTTG IVSSPRYGSK TARKKIGQLP VEAISPSTPK SPKVAEQIAE QVVEQVAGNA  480
TDVKEGKFKA RPKQGVSKQK PAVRNKSRFT NGTGGCEIPA YVIDGSLEVN IDYHVKKPSS  540
AEQSTLFVSR STEGKGRRGT EPHGGEETTP PQGRSPGMQA IVQYEQSSDL PHPNDSRASM  600
LKSSQGSQPQ GNENKPEGQL LYKVVQLHRG RDTKKGVEFL VELEGVPSHE DVKGATKDKK  660
TGFWWVPHER FEWGMDNCLL G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1825537722140B3 domain-containing transcription factor VRN
4i1k_B3e-1825537722140B3 domain-containing transcription factor VRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-20B3 family protein